PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0012.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 587aa    MW: 63405.6 Da    PI: 7.57
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31335393259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Kalax.0008s0012.1.p 335 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILITTYEGNHNHP 393
                          7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33319395IPR003657WRKY domain
SuperFamilySSF1182909.15E-28327395IPR003657WRKY domain
PROSITE profilePS5081130.136329395IPR003657WRKY domain
SMARTSM007741.7E-37334394IPR003657WRKY domain
PfamPF031061.7E-26336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDGGWGVTTV AEADRSVIPF FASKPSVISG MKIFPVSLSG RRERDEPEES GRRVVCEVDF  60
FSGEREIKKA AAAARGGEKS GVSVKEEVLH GEPSKSDLNV NTRLNLLTAN AGSDQSTVED  120
GSSLDDKRAR TSQVSQMQME LGRLNAENQR LKEMLSQVSH NYQALQMHLI AFMQQHQQQQ  180
QQQQQQPVPV LESAVNHEVG GRKSEEMVSA AAVPRQSLNL GPGSVTQEQP DELSNSSSGE  240
RTRSGSLHNN NNLEIVSKRP RSDQENSRDG KGLVDREESP DSETHEWSRS SKAAKLRDNE  300
NAVCGAKLVD QQATEATMRK ARVSVRARSE APLISDGCQW RKYGQKMAKG NPCPRAYYRC  360
TMAVGCPVRK QVQRCAEDTT ILITTYEGNH NHPLPPAAVA MASTTSAAAS MLLSGSMSST  420
DGLMNPNLLA RAILPPCSSN IATISASAPF PTITLDLTHS PNPLHPQRQQ QQQQQPFSMP  480
AANNTFPQIL GQALYNQSRF SGLQLSQDSN PTSKGLPLPI PTPPTSLAQV QHTSFADTVS  540
AATAAITNDP NFTALIAAAI SSFISANNKQ PNSTSSNPNT TTQQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23321397176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026134.10.0WRKY family transcription factor
SwissprotQ9XEC31e-141WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLA0A061GGS50.0A0A061GGS5_THECC; WRKY family transcription factor
STRINGVIT_10s0116g01200.t011e-175(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-119WRKY DNA-binding protein 31